Transcript: lnc-NSUN6-8:3

Basic information

LNCipedia transcript ID: lnc-NSUN6-8:3 
LNCipedia gene ID: lnc-NSUN6-8
Ensembl Gene ID: ENSG00000233968
Ensembl Transcript ID: ENST00000451713
Location (hg38): chr10:19710328-19728550
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1404 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451713.1; RP11-354E11.2-001; OTTHUMT00000047094.1; NONHSAT011666; ENST00000451713.5
Alternative gene names: ENSG00000233968.1; RP11-354E11.2; OTTHUMG00000017777.1; ENSG00000233968.2; ENSG00000233968.6; AL157895.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4992 non-coding 
CPAT coding probability 14.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NSUN6-8:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NEBL-2:3
4.0 lnc-NEBL-2:3
4.1 lnc-NEBL-2:3
5.0 lnc-NEBL-2:3
5.1 lnc-MPP7-112:3
5.2 lnc-NSUN6-8:3