Transcript: lnc-NT5C2-1:1

Basic information

LNCipedia transcript ID: lnc-NT5C2-1:1 
LNCipedia gene ID: lnc-NT5C2-1
Location (hg38): chr10:103198733-103276994
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1552 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000499348; NONHSAT016165
Alternative gene names: ENSG00000244967; AL360001.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.412 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NT5C2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NT5C2-1:1
3.1 lnc-NT5C2-1:1
4.0 lnc-NT5C2-1:1
4.1 lnc-NT5C2-1:1
5.0 lnc-NT5C2-1:1
5.1 lnc-CPN1-97:2
5.2 lnc-NT5C2-1:1