Transcript: lnc-NT5M-1:3

Basic information

LNCipedia transcript ID: lnc-NT5M-1:3 
LNCipedia gene ID: lnc-NT5M-1
Location (hg38): chr17:17188668-17192648
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3981 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000567268.1; RP11-45M22.1-001; OTTHUMT00000431331.1; NONHSAT146065
Alternative gene names: ENSG00000259850.1; RP11-45M22.1; OTTHUMG00000175972.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.4588 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NT5M-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf84-1:2
4.0 lnc-C17orf84-1:2
4.1 lnc-C17orf84-1:2
5.0 lnc-C17orf84-1:2
5.1 lnc-GLP2R-99:3
5.2 lnc-NT5M-1:3