Transcript: lnc-NTM-3:1

Basic information

LNCipedia transcript ID: lnc-NTM-3:1 
LNCipedia gene ID: lnc-NTM-3
Ensembl Gene ID: ENSG00000227125
Ensembl Transcript ID: ENST00000447864
Location (hg38): chr11:131204999-131215163
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019159; ENST00000447864; ENST00000447864.1; AP002856.6-001; OTTHUMT00000316014.1; NONHSAT025166
Alternative gene names: XLOC_009338; linc-NTM-3; ENSG00000227125; AP002856.6; ENSG00000227125.1; OTTHUMG00000150049.1; AP002856.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.2136 non-coding 
CPAT coding probability 12.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTM-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NTM-3:1
3.1 lnc-NTM-3:1
4.0 lnc-NTM-3:1
4.1 lnc-NTM-3:1
5.0 lnc-NTM-3:1
5.1 lnc-JAM3-19:1
5.2 lnc-NTM-3:1