Transcript: lnc-NTM-5:1

Basic information

LNCipedia transcript ID: lnc-NTM-5:1 
LNCipedia gene ID: lnc-NTM-5
Ensembl Gene ID: ENSG00000236129
Ensembl Transcript ID: ENST00000441665
Location (hg38): chr11:131187022-131189753
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 635 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019158; ENST00000441665; ENST00000441665.1; AP002856.4-001; OTTHUMT00000141934.2; NONHSAT025164
Alternative gene names: XLOC_009336; linc-NTM-5; ENSG00000236129; AP002856.4; ENSG00000236129.1; OTTHUMG00000066362.2; AP002856.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.4801 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTM-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NTM-5:1
3.1 lnc-NTM-5:1
4.0 lnc-NTM-5:1
4.1 lnc-NTM-5:1
5.0 lnc-NTM-5:1
5.1 lnc-JAM3-21:1
5.2 lnc-NTM-5:1