Transcript: lnc-NTMT1-4:7

Basic information

LNCipedia transcript ID: lnc-NTMT1-4:7 
LNCipedia gene ID: lnc-NTMT1-4
Ensembl Gene ID: ENSG00000226355
Ensembl Transcript ID: ENST00000439014
Location (hg38): chr9:129438216-129439118
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 800 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015763; ENST00000439014; ENST00000439014.1; RP11-65J3.2-001; OTTHUMT00000054574.2; NONHSAT135065
Alternative gene names: XLOC_007586; linc-METTL11A-3; ENSG00000226355; RP11-65J3.2; ENSG00000226355.1; OTTHUMG00000020779.2; AL353803.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.5556 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTMT1-4:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-METTL11A-2:2
3.1 lnc-METTL11A-4:2
4.0 lnc-METTL11A-4:2
4.1 lnc-METTL11A-4:2
5.0 lnc-METTL11A-4:2
5.1 lnc-PTPA-19:7
5.2 lnc-NTMT1-4:7