Transcript: lnc-NTN1-3:1

Basic information

LNCipedia transcript ID: lnc-NTN1-3:1 
LNCipedia gene ID: lnc-NTN1-3
Location (hg38): chr17:9283174-9305651
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 260 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000579641.1; RP11-85B7.4-001; OTTHUMT00000446599.1; NONHSAT145586
Alternative gene names: ENSG00000263708.1; RP11-85B7.4; OTTHUMG00000179476.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.1145 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTN1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NTN1-3:1
4.0 lnc-NTN1-3:1
4.1 lnc-NTN1-3:1
5.0 lnc-NTN1-3:1
5.1 lnc-NTN1-3:1
5.2 lnc-NTN1-3:1