Transcript: lnc-NTN3-1:1

Basic information

LNCipedia transcript ID: lnc-NTN3-1:1 
LNCipedia gene ID: lnc-NTN3-1
Location (hg38): chr16:2476558-2477061
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 504 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000561847.1; RP11-715J22.6-001; OTTHUMT00000435642.1; NONHSAT052118
Alternative gene names: ENSG00000260293.1; RP11-715J22.6; OTTHUMG00000177151.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.5588 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTN3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NTN3-1:1
4.0 lnc-NTN3-1:1
4.1 lnc-NTN3-1:1
5.0 lnc-NTN3-1:1
5.1 lnc-DNASE1L2-28:1
5.2 lnc-NTN3-1:1