Transcript: lnc-NTN4-1:2

Basic information

LNCipedia transcript ID: lnc-NTN4-1:2 
LNCipedia gene ID: lnc-NTN4-1
Ensembl Gene ID: ENSG00000258343
Ensembl Transcript ID: ENST00000553194
RefSeq ID: NR_135014
Location (hg38): chr12:95795345-95858839
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 467 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000553194.1; RP11-536G4.2-001; OTTHUMT00000408622.1; NONHSAT030040; NR_135014.1
Alternative gene names: ENSG00000258343.1; RP11-536G4.2; OTTHUMG00000170349.1; AC090001.1; LOC105369921


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.5404 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTN4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC38-1:1
4.0 lnc-NTN4-1:2
4.1 lnc-NTN4-1:2
5.0 lnc-NTN4-1:2
5.1 lnc-NTN4-1:2
5.2 lnc-NTN4-1:2