Transcript: lnc-NTN4-1:3

Basic information

LNCipedia transcript ID: lnc-NTN4-1:3 
LNCipedia gene ID: lnc-NTN4-1
Ensembl Gene ID: ENSG00000258343
Ensembl Transcript ID: ENST00000551893
Location (hg38): chr12:95858237-95858798
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 396 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551893.1; RP11-536G4.2-002; OTTHUMT00000408624.1; NONHSAT030043
Alternative gene names: ENSG00000258343.1; RP11-536G4.2; OTTHUMG00000170349.1; AC090001.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.5372 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTN4-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC38-1:2
4.0 lnc-NTN4-1:3
4.1 lnc-NTN4-1:3
5.0 lnc-NTN4-1:3
5.1 lnc-NTN4-1:3
5.2 lnc-NTN4-1:3