Transcript: lnc-NTRK3-3:1

Basic information

LNCipedia transcript ID: lnc-NTRK3-3:1 
LNCipedia gene ID: lnc-NTRK3-3
Ensembl Gene ID: ENSG00000259620
Ensembl Transcript ID: ENST00000558587
RefSeq ID: NR_135683
Location (hg38): chr15:86938797-86988426
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 499 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000558587.1; RP11-133L19.1-001; OTTHUMT00000415796.1; NR_135683.1
Alternative gene names: ENSG00000259620.1; RP11-133L19.1; OTTHUMG00000171910.1; AC016987.1; LOC102724452


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.026 non-coding 
CPAT coding probability 17.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTRK3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NTRK3-3:1
4.0 lnc-NTRK3-3:1
4.1 lnc-NTRK3-3:1
5.0 lnc-NTRK3-3:1
5.1 lnc-NTRK3-3:1
5.2 lnc-NTRK3-3:1