Transcript: lnc-NTS-1:1

Basic information

LNCipedia transcript ID: lnc-NTS-1:1 
LNCipedia gene ID: lnc-NTS-1
Ensembl Gene ID: ENSG00000258178
Ensembl Transcript ID: ENST00000547033
Location (hg38): chr12:85958686-85960946
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1258 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547033; ENST00000547033.1; RP11-18J9.3-001; OTTHUMT00000406211.1; NONHSAT029758
Alternative gene names: ENSG00000258178; RP11-18J9.3; ENSG00000258178.1; OTTHUMG00000169845.1; AC016993.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.0245 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NTS-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NTS-1:1
3.1 lnc-NTS-1:1
4.0 lnc-NTS-1:1
4.1 lnc-NTS-1:1
5.0 lnc-NTS-1:1
5.1 lnc-NTS-1:1
5.2 lnc-NTS-1:1