Transcript: lnc-NUBPL-1:3

Basic information

LNCipedia transcript ID: lnc-NUBPL-1:3 
LNCipedia gene ID: lnc-NUBPL-1
Ensembl Gene ID: ENSG00000250365
Ensembl Transcript ID: ENST00000502430
RefSeq ID: NR_110045
Location (hg38): chr14:31420758-31452883
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1213 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000502430; ENST00000502430.2; CTD-2213F21.2-001; OTTHUMT00000409474.1; NONHSAT036281; NR_110045; NR_110045.1
Alternative gene names: ENSG00000250365; CTD-2213F21.2; ENSG00000250365.2; OTTHUMG00000170517.1; ENSG00000250365.6; AL139353.2; LOC101927124


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8306 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUBPL-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUBPL-1:3
3.1 lnc-NUBPL-1:3
4.0 lnc-NUBPL-1:3
4.1 lnc-NUBPL-1:3
5.0 lnc-NUBPL-1:3
5.1 lnc-SCFD1-11:2
5.2 lnc-NUBPL-1:3