Transcript: lnc-NUDCD2-2:14

Basic information

LNCipedia transcript ID: lnc-NUDCD2-2:14 
LNCipedia gene ID: lnc-NUDCD2-2
Ensembl Gene ID: ENSG00000254186
Ensembl Transcript ID: ENST00000517722
Location (hg38): chr5:162558685-162623461
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 736 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517722; ENST00000517722.1; RP11-167P20.1-001; OTTHUMT00000374096.1; NONHSAT104887
Alternative gene names: ENSG00000254186; RP11-167P20.1; ENSG00000254186.1; OTTHUMG00000163549.1; AC091901.1; ENSG00000254186.2; AC113414.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.2474 non-coding 
CPAT coding probability 11.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDCD2-2:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUDCD2-2:1
3.1 lnc-NUDCD2-4:1
4.0 lnc-NUDCD2-4:1
4.1 lnc-NUDCD2-4:1
5.0 lnc-NUDCD2-4:1
5.1 lnc-FAM71B-44:14
5.2 lnc-NUDCD2-2:14