Transcript: lnc-NUDCD2-2:4

Basic information

LNCipedia transcript ID: lnc-NUDCD2-2:4 
LNCipedia gene ID: lnc-NUDCD2-2
Ensembl Gene ID: ENSG00000254186
Ensembl Transcript ID: ENST00000509211
Location (hg38): chr5:163038063-163256967
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509211.1; RP11-541P9.3-003; OTTHUMT00000372725.1; NONHSAT104892
Alternative gene names: ENSG00000250061.1; RP11-541P9.3; OTTHUMG00000163326.2; ENSG00000250061.5; AC091976.1; ENSG00000254186.2; AC113414.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.9973 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDCD2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUDCD2-2:4
4.0 lnc-NUDCD2-2:4
4.1 lnc-NUDCD2-2:4
5.0 lnc-NUDCD2-2:4
5.1 lnc-FAM71B-44:12
5.2 lnc-NUDCD2-2:4