Transcript: lnc-NUDT12-4:1

Basic information

LNCipedia transcript ID: lnc-NUDT12-4:1 
LNCipedia gene ID: lnc-NUDT12-4
Location (hg38): chr5:104380556-104381039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 355 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00009744; ENST00000506337; ENST00000506337.1; RP11-313L6.1-001; OTTHUMT00000371854.1; NONHSAT103076
Alternative gene names: XLOC_004946; linc-NUDT12-4; ENSG00000250165; RP11-313L6.1; ENSG00000250165.1; OTTHUMG00000163151.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.8199 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDT12-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUDT12-4:1
3.1 lnc-NUDT12-4:1
4.0 lnc-NUDT12-4:1
4.1 lnc-NUDT12-4:1
5.0 lnc-NUDT12-4:1
5.1 lnc-LOX-164:1
5.2 lnc-NUDT12-4:1