Transcript: lnc-NUDT3-1:2

Basic information

LNCipedia transcript ID: lnc-NUDT3-1:2 
LNCipedia gene ID: lnc-NUDT3-1
Location (hg38): chr6:34279680-34282192
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2513 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT112124
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.4461 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUDT3-1:2 yes no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUDT3-1:2
4.0 lnc-NUDT3-1:2
4.1 lnc-NUDT3-1:2
5.0 lnc-NUDT3-1:2
5.1 lnc-SPDEF-9:1
5.2 lnc-NUDT3-1:2