Transcript: lnc-NUDT5-1:1

Basic information

LNCipedia transcript ID: lnc-NUDT5-1:1 
LNCipedia gene ID: lnc-NUDT5-1
Ensembl Gene ID: ENSG00000228302
Ensembl Transcript ID: ENST00000421657
Location (hg38): chr10:12245628-12247845
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1914 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421657.1; RP11-186N15.3-001; OTTHUMT00000046810.1; NONHSAT011455
Alternative gene names: ENSG00000228302.1; RP11-186N15.3; OTTHUMG00000017681.1; ENSG00000228302.2; AL512770.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.0397 non-coding 
CPAT coding probability 44.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NUDT5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUDT5-1:1
4.0 lnc-NUDT5-1:1
4.1 lnc-NUDT5-1:1
5.0 lnc-NUDT5-1:1
5.1 lnc-KLF6-148:1
5.2 lnc-NUDT5-1:1