Transcript: lnc-NUF2-1:1

Basic information

LNCipedia transcript ID: lnc-NUF2-1:1 
LNCipedia gene ID: lnc-NUF2-1
Ensembl Gene ID: ENSG00000237756
Ensembl Transcript ID: ENST00000416401
Location (hg38): chr1:163259850-163260659
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 469 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000327; ENST00000416401; ENST00000416401.1; RP11-77M5.1-001; OTTHUMT00000080770.1; NONHSAT007253
Alternative gene names: XLOC_000446; linc-NUF2-1; ENSG00000237756; RP11-77M5.1; ENSG00000237756.1; OTTHUMG00000033149.1; AL592435.1; AL592435.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.9904 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUF2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUF2-1:1
3.1 lnc-NUF2-1:1
4.0 lnc-NUF2-1:1
4.1 lnc-NUF2-1:1
5.0 lnc-NUF2-1:1
5.1 lnc-PCP4L1-35:1
5.2 lnc-NUF2-1:1