Transcript: lnc-NUF2-3:1

Basic information

LNCipedia transcript ID: lnc-NUF2-3:1 
LNCipedia gene ID: lnc-NUF2-3
Ensembl Gene ID: ENSG00000232892
Ensembl Transcript ID: ENST00000415437
RefSeq ID: NR_110699
Location (hg38): chr1:163161675-163213023
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2633 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000415437.1; RP11-267N12.1-001; OTTHUMT00000080684.1; NONHSAT007247; NR_110699; NR_110699.1
Alternative gene names: ENSG00000232892.1; RP11-267N12.1; OTTHUMG00000033126.1; AL499616.1; LOC101928404


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.9943 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUF2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUF2-3:1
4.0 lnc-NUF2-3:1
4.1 lnc-NUF2-3:1
5.0 lnc-NUF2-3:1
5.1 lnc-PCP4L1-33:1
5.2 lnc-NUF2-3:1