Transcript: lnc-NUMB-2:1

Basic information

LNCipedia transcript ID: lnc-NUMB-2:1 
LNCipedia gene ID: lnc-NUMB-2
Ensembl Gene ID: ENSG00000258944
Ensembl Transcript ID: ENST00000556578
Location (hg38): chr14:73272182-73274081
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 777 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556578.1; RP4-647C14.3-001; OTTHUMT00000413384.1; NONHSAT037693
Alternative gene names: ENSG00000258944.1; RP4-647C14.3; OTTHUMG00000171435.1; AC004846.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.1241 non-coding 
CPAT coding probability 8.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUMB-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUMB-2:1
4.0 lnc-NUMB-2:1
4.1 lnc-NUMB-2:1
5.0 lnc-NUMB-2:1
5.1 lnc-ABCD4-25:1
5.2 lnc-NUMB-2:1