Transcript: lnc-NUP58-1:1

Basic information

LNCipedia transcript ID: lnc-NUP58-1:1 
LNCipedia gene ID: lnc-NUP58-1
Location (hg38): chr13:25300124-25301438
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1315 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000568856.1; RP11-271M24.2-001; OTTHUMT00000431328.1; NONHSAT032590
Alternative gene names: ENSG00000260509.1; RP11-271M24.2; OTTHUMG00000175969.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.8198 non-coding 
CPAT coding probability 5.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUP58-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUPL1-1:1
4.0 lnc-NUPL1-1:1
4.1 lnc-NUPL1-1:1
5.0 lnc-NUPL1-1:1
5.1 lnc-GTF3A-44:1
5.2 lnc-NUP58-1:1