Transcript: lnc-NUP58-2:1

Basic information

LNCipedia transcript ID: lnc-NUP58-2:1 
LNCipedia gene ID: lnc-NUP58-2
Location (hg38): chr13:25193107-25210295
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 302 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435725.1; RP11-165I9.6-001; OTTHUMT00000044218.1; NONHSAT032586
Alternative gene names: ENSG00000225105.1; RP11-165I9.6; OTTHUMG00000016599.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.8041 non-coding 
CPAT coding probability 9.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUP58-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUPL1-2:1
4.0 lnc-NUPL1-2:1
4.1 lnc-NUPL1-2:1
5.0 lnc-NUPL1-2:1
5.1 lnc-GTF3A-49:1
5.2 lnc-NUP58-2:1