Transcript: lnc-NUPL2-2:2

Basic information

LNCipedia transcript ID: lnc-NUPL2-2:2 
LNCipedia gene ID: lnc-NUPL2-2
Location (hg38): chr7:23206013-23208045
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1999 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: TCONS_00012871; ENST00000413042; NONHSAT119518
Alternative gene names: XLOC_006012; linc-GPNMB; ENSG00000226816; AC005082.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.5278 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUPL2-2:2 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUPL2-1:1
3.1 lnc-NUPL2-1:2
4.0 lnc-NUPL2-2:2
4.1 lnc-NUPL2-2:2
5.0 lnc-NUPL2-2:2
5.1 lnc-SNX10-61:2
5.2 lnc-NUPL2-2:2