Transcript: lnc-NUPL2-2:3

Basic information

LNCipedia transcript ID: lnc-NUPL2-2:3 
LNCipedia gene ID: lnc-NUPL2-2
Ensembl Gene ID: ENSG00000226816
Ensembl Transcript ID: ENST00000413042
Location (hg38): chr7:23205787-23208045
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2259 bp
Exons: 1
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413042.3
Alternative gene names: ENSG00000226816.3; AC005082.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.5584 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUPL2-2:3 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SNX10-61:1
5.1 lnc-SNX10-61:1
5.2 lnc-NUPL2-2:3