Transcript: lnc-NUPR1-2:1

Basic information

LNCipedia transcript ID: lnc-NUPR1-2:1 
LNCipedia gene ID: lnc-NUPR1-2
Ensembl Gene ID: ENSG00000275441
Ensembl Transcript ID: ENST00000613454
Location (hg38): chr16:28553709-28554140
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 432 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613454.1
Alternative gene names: ENSG00000275441.1; RP11-666O2.2; AC020765.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.522 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUPR1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NUPR1-2:1
4.1 lnc-NUPR1-2:1
5.0 lnc-NUPR1-2:1
5.1 lnc-SULT1A2-2:2
5.2 lnc-NUPR1-2:1