Transcript: lnc-NUPR2-3:1

Basic information

LNCipedia transcript ID: lnc-NUPR2-3:1 
LNCipedia gene ID: lnc-NUPR2-3
Location (hg38): chr7:56477510-56484412
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1934 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013811; NONHSAT120754
Alternative gene names: XLOC_006456; linc-LOC389493-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 64.0804 coding 
CPAT coding probability 5.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NUPR2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP4-725G10.1.1-3:1
3.1 lnc-RP4-725G10.1.1-3:1
4.0 lnc-RP4-725G10.1.1-3:1
4.1 lnc-RP4-725G10.1.1-3:1
5.0 lnc-RP4-725G10.1.1-3:1
5.1 lnc-PSPH-10:1
5.2 lnc-NUPR2-3:1