Transcript: lnc-NUPR2-3:5

Basic information

LNCipedia transcript ID: lnc-NUPR2-3:5 
LNCipedia gene ID: lnc-NUPR2-3
Location (hg38): chr7:56482107-56483295
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 671 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012909
Alternative gene names: XLOC_006456; linc-LOC389493-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.7823 non-coding 
CPAT coding probability 5.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUPR2-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP4-725G10.1.1-3:3
3.1 lnc-RP4-725G10.1.1-3:4
4.0 lnc-RP4-725G10.1.1-3:4
4.1 lnc-RP4-725G10.1.1-3:4
5.0 lnc-RP4-725G10.1.1-3:4
5.1 lnc-PSPH-10:5
5.2 lnc-NUPR2-3:5