Transcript: lnc-NUTM1-11:6

Basic information

LNCipedia transcript ID: lnc-NUTM1-11:6 
LNCipedia gene ID: lnc-NUTM1-11
Ensembl Gene ID: ENSG00000259181
Ensembl Transcript ID: ENST00000560140
Location (hg38): chr15:34993646-35003221
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560140.1; RP11-463I20.3-001; OTTHUMT00000417761.1; NONHSAT041612
Alternative gene names: ENSG00000259181.1; RP11-463I20.3; OTTHUMG00000172303.1; AC114546.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.1397 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUTM1-11:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC114546.1-1:1
4.0 lnc-AC114546.1-2:4
4.1 lnc-AC114546.1-2:4
5.0 lnc-AC114546.1-2:4
5.1 lnc-TMEM62-133:6
5.2 lnc-NUTM1-11:6