Transcript: lnc-NVL-1:2

Basic information

LNCipedia transcript ID: lnc-NVL-1:2 
LNCipedia gene ID: lnc-NVL-1
Ensembl Gene ID: ENSG00000232628
Ensembl Transcript ID: ENST00000453760
Location (hg38): chr1:224208747-224210412
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000742; ENST00000453760.1; RP11-365O16.3-002; OTTHUMT00000091468.1; NONHSAT009783; ENST00000453760.5
Alternative gene names: XLOC_001225; linc-TP53BP2-3; ENSG00000232628.1; RP11-365O16.3; OTTHUMG00000037537.1; ENSG00000232628.5; AC092809.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.2482 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NVL-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NVL-1:2
3.1 lnc-NVL-1:2
4.0 lnc-NVL-1:2
4.1 lnc-NVL-1:2
5.0 lnc-NVL-1:2
5.1 lnc-LEFTY2-32:4
5.2 lnc-NVL-1:2