Transcript: lnc-NXNL1-3:12

Basic information

LNCipedia transcript ID: lnc-NXNL1-3:12 
LNCipedia gene ID: lnc-NXNL1-3
Location (hg38): chr19:17497371-17511488
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 299 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000269439.1|FTMT27300009949.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 54.6839 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-NXNL1-3:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NXNL1-3:12
5.0 lnc-NXNL1-3:12
5.1 lnc-PALM3-108:5
5.2 lnc-NXNL1-3:12