Transcript: lnc-NXNL1-3:3

Basic information

LNCipedia transcript ID: lnc-NXNL1-3:3 
LNCipedia gene ID: lnc-NXNL1-3
Ensembl Gene ID: ENSG00000269439
Ensembl Transcript ID: ENST00000595116
Location (hg38): chr19:17503436-17511468
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 313 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT062895; ENST00000595116.1
Alternative gene names: ENSG00000269439.1; CTD-3131K8.2; ENSG00000269439.5; AC010618.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2018 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXNL1-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NXNL1-3:3
4.0 lnc-NXNL1-3:3
4.1 lnc-NXNL1-3:3
5.0 lnc-NXNL1-3:3
5.1 lnc-PALM3-108:8
5.2 lnc-NXNL1-3:3