Transcript: lnc-NXPE2-52:3

Basic information

LNCipedia transcript ID: lnc-NXPE2-52:3 
LNCipedia gene ID: lnc-NXPE2-52
Ensembl Gene ID: ENSG00000256315
Ensembl Transcript ID: ENST00000539685
Location (hg38): chr11:115396820-115397577
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 384 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539685; ENST00000539685.1; AP000462.1-002; OTTHUMT00000398930.1; NONHSAT024305
Alternative gene names: ENSG00000256315; AP000462.1; ENSG00000256315.1; OTTHUMG00000168236.1; AP000462.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -456.9295 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPE2-52:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-4:2
3.1 lnc-FAM55B-4:2
4.0 lnc-FAM55B-4:2
4.1 lnc-FAM55B-4:2
5.0 lnc-FAM55B-4:2
5.1 lnc-PTS-52:3
5.2 lnc-NXPE2-52:3