Transcript: lnc-NXPE2-52:4

Basic information

LNCipedia transcript ID: lnc-NXPE2-52:4 
LNCipedia gene ID: lnc-NXPE2-52
Ensembl Gene ID: ENSG00000256315
Ensembl Transcript ID: ENST00000540545
Location (hg38): chr11:115396851-115397619
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 715 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540545; ENST00000540545.1; AP000462.1-003; OTTHUMT00000398931.1; NONHSAT024306
Alternative gene names: ENSG00000256315; AP000462.1; ENSG00000256315.1; OTTHUMG00000168236.1; AP000462.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.0989 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPE2-52:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-4:3
3.1 lnc-FAM55B-4:3
4.0 lnc-FAM55B-4:3
4.1 lnc-FAM55B-4:3
5.0 lnc-FAM55B-4:3
5.1 lnc-PTS-52:4
5.2 lnc-NXPE2-52:4