Transcript: lnc-NXPE2-6:1

Basic information

LNCipedia transcript ID: lnc-NXPE2-6:1 
LNCipedia gene ID: lnc-NXPE2-6
Ensembl Gene ID: ENSG00000255599
Ensembl Transcript ID: ENST00000424313
Location (hg38): chr11:115628065-115629743
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424313; ENST00000424313.2; AP000997.1-001; OTTHUMT00000398853.1; NONHSAT024314
Alternative gene names: ENSG00000255599; AP000997.1; ENSG00000255599.1; OTTHUMG00000168211.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -602.7753 non-coding 
CPAT coding probability 9.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPE2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-6:1
3.1 lnc-FAM55B-6:1
4.0 lnc-FAM55B-6:1
4.1 lnc-FAM55B-6:1
5.0 lnc-FAM55B-6:1
5.1 lnc-PTS-54:1
5.2 lnc-NXPE2-6:1