Transcript: lnc-NXPE2-8:1

Basic information

LNCipedia transcript ID: lnc-NXPE2-8:1 
LNCipedia gene ID: lnc-NXPE2-8
Location (hg38): chr11:115734860-115757644
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2046 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019480; NONHSAT024317
Alternative gene names: XLOC_009283; linc-APOC3-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.7036 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPE2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-7:1
3.1 lnc-FAM55B-8:1
4.0 lnc-FAM55B-8:1
4.1 lnc-FAM55B-8:1
5.0 lnc-FAM55B-8:1
5.1 lnc-HMBS-66:1
5.2 lnc-NXPE2-8:1