Transcript: lnc-NXPH1-2:2

Basic information

LNCipedia transcript ID: lnc-NXPH1-2:2 
LNCipedia gene ID: lnc-NXPH1-2
RefSeq ID: NR_125740
Location (hg38): chr7:8262225-8343281
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1073 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125740; NR_125740.1
Alternative gene names: LOC100505938


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -83.2573 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPH1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GLCCI1-2:6
4.0 lnc-NXPH1-2:2
4.1 lnc-NXPH1-2:2
5.0 lnc-NXPH1-2:2
5.1 lnc-SLC29A4-50:12
5.2 lnc-NXPH1-2:2