Transcript: lnc-NXPH1-2:3

Basic information

LNCipedia transcript ID: lnc-NXPH1-2:3 
LNCipedia gene ID: lnc-NXPH1-2
Ensembl Gene ID: ENSG00000244239
Ensembl Transcript ID: ENST00000458624
Location (hg38): chr7:8262233-8262821
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 429 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458624; ENST00000458624.1; AC007009.1-001; OTTHUMT00000324882.1
Alternative gene names: ENSG00000244239; AC007009.1; ENSG00000244239.1; OTTHUMG00000152018.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -452.7609 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPH1-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NXPH1-1:1
3.1 lnc-GLCCI1-2:1
4.0 lnc-NXPH1-2:3
4.1 lnc-NXPH1-2:3
5.0 lnc-NXPH1-2:3
5.1 lnc-SLC29A4-50:13
5.2 lnc-NXPH1-2:3