Transcript: lnc-NXPH1-2:4

Basic information

LNCipedia transcript ID: lnc-NXPH1-2:4 
LNCipedia gene ID: lnc-NXPH1-2
Ensembl Gene ID: ENSG00000229970
Ensembl Transcript ID: ENST00000424460
Location (hg38): chr7:8262264-8344516
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1853 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424460; ENST00000424460.1; AC007128.1-001; OTTHUMT00000324590.2; NONHSAT119154
Alternative gene names: ENSG00000229970; AC007128.1; ENSG00000229970.2; OTTHUMG00000151948.2; ENSG00000229970.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.3182 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPH1-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NXPH1-1:2
3.1 lnc-GLCCI1-2:2
4.0 lnc-NXPH1-2:4
4.1 lnc-NXPH1-2:4
5.0 lnc-NXPH1-2:4
5.1 lnc-SLC29A4-50:14
5.2 lnc-NXPH1-2:4