Transcript: lnc-NXPH1-2:6

Basic information

LNCipedia transcript ID: lnc-NXPH1-2:6 
LNCipedia gene ID: lnc-NXPH1-2
Ensembl Gene ID: ENSG00000272328
Ensembl Transcript ID: ENST00000435967
Location (hg38): chr7:8303741-8341343
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435967; ENST00000435967.1; AC007128.1-002; OTTHUMT00000324671.1; NONHSAT119156
Alternative gene names: ENSG00000229970; AC007128.1; ENSG00000229970.2; OTTHUMG00000151948.2; ENSG00000272328.1; RP4-594A5.1; AC007128.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.2573 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPH1-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NXPH1-1:3
3.1 lnc-GLCCI1-2:3
4.0 lnc-NXPH1-2:6
4.1 lnc-NXPH1-2:6
5.0 lnc-NXPH1-2:6
5.1 lnc-SLC29A4-50:16
5.2 lnc-NXPH1-2:6