Transcript: lnc-NXPH2-5:1

Basic information

LNCipedia transcript ID: lnc-NXPH2-5:1 
LNCipedia gene ID: lnc-NXPH2-5
Location (hg38): chr2:137878754-137926407
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1269 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00003408; ENST00000458351; ENST00000458351.1; AC020601.1-001; OTTHUMT00000331841.1; NONHSAT074653
Alternative gene names: XLOC_002335; linc-CXCR4-3; ENSG00000234007; AC020601.1; ENSG00000234007.1; OTTHUMG00000153618.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.3983 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPH2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NXPH2-4:1
3.1 lnc-NXPH2-5:1
4.0 lnc-NXPH2-5:1
4.1 lnc-NXPH2-5:1
5.0 lnc-NXPH2-5:1
5.1 lnc-PRSS40B-71:2
5.2 lnc-NXPH2-5:1