Transcript: lnc-NYAP1-1:2

Basic information

LNCipedia transcript ID: lnc-NYAP1-1:2 
LNCipedia gene ID: lnc-NYAP1-1
Ensembl Gene ID: ENSG00000225807
Ensembl Transcript ID: ENST00000392471
Location (hg38): chr7:100509717-100519926
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013052; ENST00000392471; ENST00000392471.2; RP11-44M6.1-001; OTTHUMT00000342768.1; NONHSAT122382
Alternative gene names: XLOC_006192; linc-AGFG2; ENSG00000225807; RP11-44M6.1; ENSG00000225807.1; OTTHUMG00000156028.1; AC069281.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.0463 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NYAP1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NYAP1-1:2
3.1 lnc-NYAP1-1:2
4.0 lnc-NYAP1-1:2
4.1 lnc-NYAP1-1:2
5.0 lnc-NYAP1-1:2
5.1 lnc-PILRA-8:3
5.2 lnc-NYAP1-1:2