Transcript: lnc-OAF-3:3

Basic information

LNCipedia transcript ID: lnc-OAF-3:3 
LNCipedia gene ID: lnc-OAF-3
Ensembl Gene ID: ENSG00000176984
Ensembl Transcript ID: ENST00000530303
Location (hg38): chr11:120168977-120170153
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 555 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530303.5
Alternative gene names: ENSG00000176984.6; AP000679.2; AP000679.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -367.5582 non-coding 
CPAT coding probability 35.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OAF-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AP000679.2.1-3:2
4.1 lnc-AP000679.2.1-3:2
5.0 lnc-AP000679.2.1-3:2
5.1 lnc-HINFP-14:3
5.2 lnc-OAF-3:3