Transcript: lnc-OCA2-2:1

Basic information

LNCipedia transcript ID: lnc-OCA2-2:1 
LNCipedia gene ID: lnc-OCA2-2
Ensembl Gene ID: ENSG00000259168
Ensembl Transcript ID: ENST00000557170
Location (hg38): chr15:27536900-27541991
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1100 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557170.1; RP11-100M12.3-002; OTTHUMT00000415255.1; NONHSAT041217
Alternative gene names: ENSG00000259168.1; RP11-100M12.3; OTTHUMG00000171830.1; AC104002.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.9041 non-coding 
CPAT coding probability 7.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OCA2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OCA2-2:1
4.0 lnc-OCA2-2:1
4.1 lnc-OCA2-2:1
5.0 lnc-OCA2-2:1
5.1 lnc-GABRB3-5:1
5.2 lnc-OCA2-2:1