Transcript: lnc-ODF2-1:1

Basic information

LNCipedia transcript ID: lnc-ODF2-1:1 
LNCipedia gene ID: lnc-ODF2-1
Ensembl Gene ID: ENSG00000273186
Ensembl Transcript ID: ENST00000610052
Location (hg38): chr9:128431598-128432006
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 409 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610052.1
Alternative gene names: ENSG00000273186.1; RP11-339B21.10; AL359091.4; AL359091.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5959 non-coding 
CPAT coding probability 21.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ODF2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ODF2-1:1
4.0 lnc-ODF2-1:1
4.1 lnc-ODF2-1:1
5.0 lnc-ODF2-1:1
5.1 lnc-PTPA-39:1
5.2 lnc-ODF2-1:1