Transcript: lnc-ODF4-2:2

Basic information

LNCipedia transcript ID: lnc-ODF4-2:2 
LNCipedia gene ID: lnc-ODF4-2
Ensembl Gene ID: ENSG00000265749
Ensembl Transcript ID: ENST00000580537
Location (hg38): chr17:8365569-8376147
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 579 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580537.1; RP11-849F2.5-001; OTTHUMT00000442319.1
Alternative gene names: ENSG00000265749.1; RP11-849F2.5; OTTHUMG00000178521.1; ENSG00000265749.5; AC135178.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -339.6666 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ODF4-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ODF4-2:2
4.0 lnc-ODF4-2:2
4.1 lnc-ODF4-2:2
5.0 lnc-ODF4-2:2
5.1 lnc-CNTROB-16:2
5.2 lnc-ODF4-2:2