Transcript: lnc-OGFOD3-1:2

Basic information

LNCipedia transcript ID: lnc-OGFOD3-1:2 
LNCipedia gene ID: lnc-OGFOD3-1
Location (hg38): chr17:82382825-82383648
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025785
Alternative gene names: XLOC_012594; linc-SECTM1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.8031 non-coding 
CPAT coding probability 10.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OGFOD3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C17orf101-1:1
3.1 lnc-C17orf101-1:1
4.0 lnc-C17orf101-1:1
4.1 lnc-C17orf101-1:1
5.0 lnc-C17orf101-1:1
5.1 lnc-CD7-2:2
5.2 lnc-OGFOD3-1:2