Transcript: lnc-OGFOD3-1:6

Basic information

LNCipedia transcript ID: lnc-OGFOD3-1:6 
LNCipedia gene ID: lnc-OGFOD3-1
Location (hg38): chr17:82380256-82382137
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1882 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1656:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 29.8659 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OGFOD3-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C17orf101-1:6
4.1 lnc-C17orf101-1:6
5.0 lnc-C17orf101-1:6
5.1 lnc-CD7-2:6
5.2 lnc-OGFOD3-1:6