Transcript: lnc-OLFML3-1:1

Basic information

LNCipedia transcript ID: lnc-OLFML3-1:1 
LNCipedia gene ID: lnc-OLFML3-1
Location (hg38): chr1:114206427-114262278
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000279; ENST00000420156; ENST00000420156.1; RP4-543J13.1-001; OTTHUMT00000032873.1; NONHSAT005353
Alternative gene names: XLOC_000352; linc-SYCP1-4; ENSG00000232895; RP4-543J13.1; ENSG00000232895.1; OTTHUMG00000011899.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.2773 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OLFML3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OLFML3-1:1
3.1 lnc-OLFML3-1:1
4.0 lnc-OLFML3-1:1
4.1 lnc-OLFML3-1:1
5.0 lnc-OLFML3-1:1
5.1 lnc-OLFML3-1:1
5.2 lnc-OLFML3-1:1