Transcript: lnc-OPA1-2:1

Basic information

LNCipedia transcript ID: lnc-OPA1-2:1 
LNCipedia gene ID: lnc-OPA1-2
Location (hg38): chr3:193840828-193843227
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2121 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005695; NONHSAT094027
Alternative gene names: XLOC_002973; linc-HES1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.8722 non-coding 
CPAT coding probability 4.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OPA1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OPA1-1:1
3.1 lnc-OPA1-2:1
4.0 lnc-OPA1-2:1
4.1 lnc-OPA1-2:1
5.0 lnc-OPA1-2:1
5.1 lnc-MUC20-40:2
5.2 lnc-OPA1-2:1